Recent Relevant Publications
Mabee, PM, Dahdul, WM, Balhoff, JP, Lapp, H, Manda, P, Uyeda, JC, Vision, TJ and M Westefield. 2018. Phenoscape: Semantic analysis of organismal traits and genes yields insights in evolutionary biology. In: Application of Semantic Technologies in Biodiversity Science, edited by A. Thessen. IOS Press, Berlin.
Uyeda, JC, Zenil-Ferguson, R and MW Pennell. 2018. Rethinking phylogenetic comparative methods. Systematic Biology 67(6):1091-1109.
Zanne, AE, Pearse, WD, Cornwell, WK, McGlinn, DJ, Wright, IJ and JC Uyeda. 2018. Functional biogeography of angiosperms: life at the extremes. New Phytologist (4):1697-1709.
Boucher, FC, Demery, V, Conti, E, Harmon, LJ and JC Uyeda. 2017. A general model for estimating macroevolutionary landscapes. Systematic Biology, 10.1093/sysbio/syx075.
Uyeda, JC, Pennell, MW, Miller, ET, Maia, R and CT McClain. 2017. The evolution of energetic scaling across the vertebrate tree of life. The American Naturalist, 190 (2): 185-199.
Uyeda, JC, Harmon, LJ and CE Blank. 2016. A comprehensive study of cyanobacterial morphological and ecological evolutionary dynamics through deep geologic time preserved in the genomes of modern taxa. PLoS ONE 11(9): e0162539. doi:10.1371/journal.pone.0162539.
Uyeda, JC, and LJ Harmon. 2014. A novel Bayesian method for inferring and interpreting the dynamics of adaptive landscapes from phylogenetic comparative data. Systematic Biology, 63(6):902-918.
Pennell, MW, Harmon, LJ and JC Uyeda. 2013. Is there room for punctuated equilibrium in macroevolution? Trends in Ecology and Evolution, 29(1):23-32.
Jones, AG, Bürger, R, Arnold, SJ, Hohenlohe, PA and JC Uyeda. 2012. The effects of stochastic and episodic movement of the optimum on the evolution of the G-matrix and the response of the mean to selection. Journal of Evolutionary Biology, 25(11):2210-2231.
Uyeda, JC, Hansen TF, Arnold SJ and J Pienaar. 2011. The million-year wait for macroevolutionary bursts. Proceedings of the National Academy of Sciences, 108(38):15908-15913.